Package: EEM 1.1.1.9000

EEM: Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data

Read raw EEM data and prepares them for further analysis.

Authors:Vipavee Trivittayasil

EEM_1.1.1.9000.tar.gz
EEM_1.1.1.9000.zip(r-4.7)EEM_1.1.1.9000.zip(r-4.6)EEM_1.1.1.9000.zip(r-4.5)
EEM_1.1.1.9000.tgz(r-4.6-any)EEM_1.1.1.9000.tgz(r-4.5-any)
EEM_1.1.1.9000.tar.gz(r-4.7-any)EEM_1.1.1.9000.tar.gz(r-4.6-any)
EEM_1.1.1.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
EEM/json (API)

# Install 'EEM' in R:
install.packages('EEM', repos = c('https://chengvt.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/chengvt/eem/issues

Datasets:

On CRAN:

Conda:

6.83 score 9 stars 75 scripts 365 downloads 15 mentions 23 exports 29 dependencies

Last updated from:cb327b695e. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK150
source / vignettesOK198
linux-release-x86_64OK150
macos-release-arm64OK238
macos-oldrel-arm64OK149
windows-develOK121
windows-releaseOK87
windows-oldrelOK85
wasm-releaseOK137

Exports:commonizeEEMcutEEMdelScatteringdelScattering2drawEEMdrawEEMggdrawEEMgg_internalfindLocalMaxfoldgenerateColorgeneratePointgetEMgetEXgetLoadinggetRegnormalizeplotLoadingplotRegplotScoreplotScoremprcompnamereadEEMunfold

Dependencies:clicolorRampscpp11farverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrplyrR.methodsS3R.ooR.utilsR6RColorBrewerRcppreshape2rlangS7scalesspstringistringrvctrsviridisLitewithr

Introduction to EEM package
Table of contents | Introduction | Importing raw data files | Visualizing EEM data | drawEEM | drawEEMgg | Preprocessing EEM data | Delete Rayleign scattering rays | delScattering | delScattering2 | Cutting portion of EEM | Unfolding 3-d data into 2-d data for multivariate analysis | Normalize | Exporting data matrix to other stats softwares | Analyzing EEM data in R | Principal component analysis (PCA) | Partial least-squares (PLS) regression | References
Rendered fromvignette.Rmdusingknitr::knitr

Last update: 2016-01-22
Started: 2015-06-05

Importing raw files
Table of contents | Introduction | Importing raw data files using readEEM | readEEM function | How to use | How it works | Company-specific formats | JASCO | Hitachi Hi-tech | Shimadzu | Horiba Aqualog | Others | Importing data matrix | Importing a data matrix file into R | *.txt or *.csv files | excel file | Folding the data matrix or data frame into EEM object
Rendered fromfile-io.Rmdusingknitr::knitr

Last update: 2016-01-22
Started: 2016-01-20

Readme and manuals

Help Manual

Help pageTopics
Subset EEM list[.EEM
Apple juiceapplejuice
Smooth out the different dimensions of EEM datacommonizeEEM
Cut portions of EEMcutEEM cutEEM.EEM cutEEM.EEMweight
Delete scattering raysdelScattering
Delete scattering raysdelScattering2
Draw contour for EEM datadrawEEM drawEEM.data.frame drawEEM.EEM drawEEM.EEMweight drawEEM.matrix drawEEM.numeric
Draw contour for EEM data using ggplot2drawEEMgg drawEEMgg.EEM drawEEMgg.EEMweight drawEEMgg_internal
EEM: A package for reading and preprocessing fluorescence excitation-emission matrixEEM-package EEM
Internal functions for EEM packageEEM-misc generateColor generatePoint getEM getEX
Extract values from other modelsextract getLoading getReg
Find local maximum peaksfindLocalMax findLocalMax.EEM findLocalMax.matrix findLocalMax.numeric
Fold EEM matrix into a listfold fold.data.frame fold.matrix fold.numeric
Glutengluten
Normalize datanormalize
Plot loadings for EEM dataplotLoading
Plot regression coefficients for EEM dataplotReg
Plot score for prcomp resultplotScore
Plot score matrix for prcomp result based on groupplotScorem
Create name for prcomp resultprcompname
Print EEMprint.EEM
Read raw files and return a listreadEEM
SummarizeEEM EEM listsummary.EEM
Unfold EEM list into a matrixunfold