Package: EEM 1.1.1.9000

EEM: Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data

Read raw EEM data and prepares them for further analysis.

Authors:Vipavee Trivittayasil

EEM_1.1.1.9000.tar.gz
EEM_1.1.1.9000.zip(r-4.5)EEM_1.1.1.9000.zip(r-4.4)EEM_1.1.1.9000.zip(r-4.3)
EEM_1.1.1.9000.tgz(r-4.4-any)EEM_1.1.1.9000.tgz(r-4.3-any)
EEM_1.1.1.9000.tar.gz(r-4.5-noble)EEM_1.1.1.9000.tar.gz(r-4.4-noble)
EEM_1.1.1.9000.tgz(r-4.4-emscripten)EEM_1.1.1.9000.tgz(r-4.3-emscripten)
EEM.pdf |EEM.html✨
EEM/json (API)

# Install 'EEM' in R:
install.packages('EEM', repos = c('https://chengvt.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/chengvt/eem/issues

Datasets:

On CRAN:

6.74 score 8 stars 69 scripts 178 downloads 15 mentions 23 exports 38 dependencies

Last updated 8 years agofrom:cb327b695e. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winOKOct 25 2024
R-4.5-linuxOKOct 25 2024
R-4.4-winOKOct 25 2024
R-4.4-macOKOct 25 2024
R-4.3-winOKOct 25 2024
R-4.3-macOKOct 25 2024

Exports:commonizeEEMcutEEMdelScatteringdelScattering2drawEEMdrawEEMggdrawEEMgg_internalfindLocalMaxfoldgenerateColorgeneratePointgetEMgetEXgetLoadinggetRegnormalizeplotLoadingplotRegplotScoreplotScoremprcompnamereadEEMunfold

Dependencies:clicolorRampscolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR.methodsS3R.ooR.utilsR6RColorBrewerRcppreshape2rlangscalesspstringistringrtibbleutf8vctrsviridisLitewithr

Importing raw files

Rendered fromfile-io.Rmdusingknitr::knitron Oct 25 2024.

Last update: 2016-01-22
Started: 2016-01-20

Introduction to EEM package

Rendered fromvignette.Rmdusingknitr::knitron Oct 25 2024.

Last update: 2016-01-22
Started: 2015-06-05

Readme and manuals

Help Manual

Help pageTopics
Subset EEM list[.EEM
Apple juiceapplejuice
Smooth out the different dimensions of EEM datacommonizeEEM
Cut portions of EEMcutEEM cutEEM.EEM cutEEM.EEMweight
Delete scattering raysdelScattering
Delete scattering raysdelScattering2
Draw contour for EEM datadrawEEM drawEEM.data.frame drawEEM.EEM drawEEM.EEMweight drawEEM.matrix drawEEM.numeric
Draw contour for EEM data using ggplot2drawEEMgg drawEEMgg.EEM drawEEMgg.EEMweight drawEEMgg_internal
EEM: A package for reading and preprocessing fluorescence excitation-emission matrixEEM-package EEM
Internal functions for EEM packageEEM-misc generateColor generatePoint getEM getEX
Extract values from other modelsextract getLoading getReg
Find local maximum peaksfindLocalMax findLocalMax.EEM findLocalMax.matrix findLocalMax.numeric
Fold EEM matrix into a listfold fold.data.frame fold.matrix fold.numeric
Glutengluten
Normalize datanormalize
Plot loadings for EEM dataplotLoading
Plot regression coefficients for EEM dataplotReg
Plot score for prcomp resultplotScore
Plot score matrix for prcomp result based on groupplotScorem
Create name for prcomp resultprcompname
Print EEMprint.EEM
Read raw files and return a listreadEEM
SummarizeEEM EEM listsummary.EEM
Unfold EEM list into a matrixunfold