{
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  "Package": "EEM",
  "Type": "Package",
  "Title": "Read and Preprocess Fluorescence Excitation-Emission Matrix\n(EEM) Data",
  "Version": "1.1.1.9000",
  "Date": "2016-04-22",
  "Author": "Vipavee Trivittayasil",
  "Maintainer": "Vipavee Trivittayasil <vipavee.tri@gmail.com>",
  "Description": "Read raw EEM data and prepares them for further analysis.",
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  "URL": "https://github.com/chengvt/EEM",
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  "Repository": "https://chengvt.r-universe.dev",
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    "delScattering2",
    "drawEEM",
    "drawEEMgg",
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    "findLocalMax",
    "fold",
    "generateColor",
    "generatePoint",
    "getEM",
    "getEX",
    "getLoading",
    "getReg",
    "normalize",
    "plotLoading",
    "plotReg",
    "plotScore",
    "plotScorem",
    "prcompname",
    "readEEM",
    "unfold"
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      "title": "Apple juice",
      "object": "applejuice",
      "file": "applejuice.rda",
      "class": [
        "EEM"
      ],
      "fields": [],
      "table": true,
      "tojson": false
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    {
      "name": "gluten",
      "title": "Gluten",
      "object": "gluten",
      "file": "gluten.rda",
      "class": [
        "EEM"
      ],
      "fields": [],
      "table": true,
      "tojson": false
    }
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  "_help": [
    {
      "page": "sub-.EEM",
      "title": "Subset EEM list",
      "topics": [
        "[.EEM"
      ]
    },
    {
      "page": "AppleJuice",
      "title": "Apple juice",
      "topics": [
        "applejuice"
      ]
    },
    {
      "page": "commonizeEEM",
      "title": "Smooth out the different dimensions of EEM data",
      "topics": [
        "commonizeEEM"
      ]
    },
    {
      "page": "cutEEM",
      "title": "Cut portions of EEM",
      "topics": [
        "cutEEM",
        "cutEEM.EEM",
        "cutEEM.EEMweight"
      ]
    },
    {
      "page": "delScattering",
      "title": "Delete scattering rays",
      "topics": [
        "delScattering"
      ]
    },
    {
      "page": "delScattering2",
      "title": "Delete scattering rays",
      "topics": [
        "delScattering2"
      ]
    },
    {
      "page": "drawEEM",
      "title": "Draw contour for EEM data",
      "topics": [
        "drawEEM",
        "drawEEM.data.frame",
        "drawEEM.EEM",
        "drawEEM.EEMweight",
        "drawEEM.matrix",
        "drawEEM.numeric"
      ]
    },
    {
      "page": "drawEEMgg",
      "title": "Draw contour for EEM data using ggplot2",
      "topics": [
        "drawEEMgg",
        "drawEEMgg.EEM",
        "drawEEMgg.EEMweight",
        "drawEEMgg_internal"
      ]
    },
    {
      "page": "EEM",
      "title": "EEM: A package for reading and preprocessing fluorescence excitation-emission matrix",
      "topics": [
        "EEM-package",
        "EEM"
      ]
    },
    {
      "page": "EEM-misc",
      "title": "Internal functions for EEM package",
      "topics": [
        "EEM-misc",
        "generateColor",
        "generatePoint",
        "getEM",
        "getEX"
      ]
    },
    {
      "page": "extract",
      "title": "Extract values from other models",
      "topics": [
        "extract",
        "getLoading",
        "getReg"
      ]
    },
    {
      "page": "findLocalMax",
      "title": "Find local maximum peaks",
      "topics": [
        "findLocalMax",
        "findLocalMax.EEM",
        "findLocalMax.matrix",
        "findLocalMax.numeric"
      ]
    },
    {
      "page": "fold",
      "title": "Fold EEM matrix into a list",
      "topics": [
        "fold",
        "fold.data.frame",
        "fold.matrix",
        "fold.numeric"
      ]
    },
    {
      "page": "gluten",
      "title": "Gluten",
      "topics": [
        "gluten"
      ]
    },
    {
      "page": "normalize",
      "title": "Normalize data",
      "topics": [
        "normalize"
      ]
    },
    {
      "page": "plotLoading",
      "title": "Plot loadings for EEM data",
      "topics": [
        "plotLoading"
      ]
    },
    {
      "page": "plotReg",
      "title": "Plot regression coefficients for EEM data",
      "topics": [
        "plotReg"
      ]
    },
    {
      "page": "plotScore",
      "title": "Plot score for prcomp result",
      "topics": [
        "plotScore"
      ]
    },
    {
      "page": "plotScorem",
      "title": "Plot score matrix for prcomp result based on group",
      "topics": [
        "plotScorem"
      ]
    },
    {
      "page": "prcompname",
      "title": "Create name for prcomp result",
      "topics": [
        "prcompname"
      ]
    },
    {
      "page": "print.EEM",
      "title": "Print EEM",
      "topics": [
        "print.EEM"
      ]
    },
    {
      "page": "readEEM",
      "title": "Read raw files and return a list",
      "topics": [
        "readEEM"
      ]
    },
    {
      "page": "summary.EEM",
      "title": "SummarizeEEM EEM list",
      "topics": [
        "summary.EEM"
      ]
    },
    {
      "page": "unfold",
      "title": "Unfold EEM list into a matrix",
      "topics": [
        "unfold"
      ]
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  "_readme": "https://github.com/chengvt/eem/raw/HEAD/readme.md",
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      "headings": [
        "Importing raw files",
        "Table of contents",
        "<a name=\"intro\"></a>Introduction",
        "<a name=\"import\"></a>Importing raw data files using readEEM",
        "<a name=\"readEEM\"></a>readEEM function",
        "<a name=\"howto\"></a>How to use",
        "<a name=\"howworks\"></a>How it works",
        "<a name=\"companyformat\"></a>Company-specific formats",
        "<a name=\"JASCO\"></a>JASCO",
        "<a name=\"hitachi\"></a>Hitachi Hi-tech",
        "<a name=\"shimadzu\"></a>Shimadzu",
        "<a name=\"horiba\"></a>Horiba Aqualog",
        "<a name=\"others\"></a>Others",
        "<a name=\"datamatrix\"></a>Importing data matrix",
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      "headings": [
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        "Table of contents",
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        "<a name=\"import\"></a>Importing raw data files",
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        "<a name=\"preprocess\"></a>Preprocessing EEM data",
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        "<a name=\"cutEEM\"></a>Cutting portion of EEM",
        "<a name=\"unfold\"></a>Unfolding 3-d data into 2-d data for multivariate analysis",
        "<a name=\"normalize\"></a>Normalize",
        "<a name=\"export\"></a>Exporting data matrix to other stats softwares",
        "<a name=\"analyze\"></a>Analyzing EEM data in R",
        "<a name=\"pca\"></a>Principal component analysis (PCA)",
        "<a name=\"pls\"></a>Partial least-squares (PLS) regression",
        "<a name=\"ref\"></a>References"
      ],
      "created": "2015-06-05 06:29:58",
      "modified": "2016-01-22 08:11:22",
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  "_nocasepkg": "eem",
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